For the first issue thats not realy true. To access the totp key you still need the actual device with the key, it’s only now split over multiple devices. Like having multiple bank cards for the same account.
For the seccond issue: Thats a good point, I have not found a good solution for that either, unfortunately
I’m kind of interested on this as well. I started using proton a few months ago when my ISP stopped supporting mailservers on consumer contracts.
Should I find something else?